Prevalence of Escherichia Coli O157 strain isolated from dairy cattle manure in Bogor, Indonesia
DOI:
https://doi.org/10.5965/223811712432025575Keywords:
Pathogenic E. Coli, Dairy farming, Real-time PCR, Urban livestock, Public health riskAbstract
In Bogor, Indonesia, where dairy farming is prevalent, dairy cattle manure serves as a significant reservoir for numerous bacteria, including the potentially harmful Escherichia coli. This study intends to evaluate the prevalence of E. coli O157, a particularly pathogenic strain, in 25 manure samples collected from different dairy farms in the Kebon Pedes area of Bogor. This study was conducted from June 2023 to December 2023. Using the Global Tricycle Surveillance ESBL E. coli WHO 2021 method for isolation and identification and employing the SYBR Green real-time polymerase chain reaction (qPCR) technique for E. coli O157 detection, the results revealed that out of 25 E. coli positive samples, three tested positive for E. coli O157, indicating a prevalence rate of 12% of this specific strain. The occurrence of this pathogenic variant suggests a noteworthy finding in understanding the microbial landscape of dairy cattle manure in Bogor. The presence of E. coli O157 in dairy cattle farms underscores the potential for continuous bacterial transmission to the environment, highlighting the importance of ongoing monitoring and comprehension of pathogenic strains in agricultural settings for the development of effective public health strategies. Improved manure management protocols and regular surveillance programs can be used as targeted interventions to mitigate the risks of E. coli O157 transmission from dairy farms.
Downloads
References
AGUNG W. 2013. Profit analysis of dairy cattle farming business (case study in Kebon Pedes, Bogor city). Dissertation (Bachelor in Economics). IPB University.
AKOMONEH et al. 2020. Prevalence and virulence gene profiles of Escherichia coli O157 from cattle slaughtered in Buea, Cameroon. PloS one 15: 12 e0235583
ARIYANTI T et al. 2022. Antimicrobial Resistance Pattern of Escherichia coli O157:H7 Isolated from Cattle in West Java, Indonesia. IOP Conference Series: Earth and Environmental Science 1107: 012048.
ARIYANTI T. 2016. Isolation characterization and utilization of bacteriophage for the identification of Escherichia coli O157: H7. Dissertation (PhD in Animal Science). Universitas Indonesia
AWADALLAH MA et al. 2016. Occurrence, genotyping, shiga toxin genes and associated risk factors of E. coli isolated from dairy farms, handlers and milk consumers. Veterinary journal: 83–88.
BSN. 2008. Badan Standardisasi Nasional. SNI 6989.59-2008 tentang Metoda Pengambilan Contoh Air Limbah. Jakarta (ID): BSN.
CDC. 2005. CENTERS FOR DISEASE CONTROL AND PREVENTION. Escherichia coli O157:H7 infection associated with drinking raw milk--Washington and Oregon, MMWR Morb Mortal 56: 165-167.
CFSPH. 2019. THE CENTER FOR FOOD SECURITY AND PUBLIC HEALTH. Enterohemorrhagic Escherichia coli and Other E. coli Causing Hemolytic Uremic Syndrome. Available at: http://www.cfsph.iastate.edu.
CHO S et al. 2006. Prevalence and characterization of Escherichia coli O157 isolates from Minnesota dairy farms and county fairs. Journal of food protection 69: 252–259.
DALLMAN et al. 2022. Identification of domestic reservoirs and common exposures in an emerging lineage of Shiga toxin-producing Escherichia coli O157:H7 in England: a population-level genomic study. The Lancet Microbe 3: e500-e508.
EFSA BIOHAZ Panel. 2020. EFSA Panel on Biological Hazards. Pathogenicity assessment of Shiga toxin-producing Escherichia coli (STEC) and the public health risk posed by contamination of food with STEC. EFSA Journal 18: 105
FESSEHA H & ASEFA I. 2022. Review of Escherichia coli Infections of Veterinary Importance. IntechOpen.
GAMBUSHE et al. 2022. Review of Escherichia coli O157:H7 Prevalence, Pathogenicity, Heavy Metal and Antimicrobial Resistance, African Perspective. Infection and Drug Resistance 15: 4645 - 4673.
GETANEH DK et al. 2021. Prevalence of Escherichia coli O157:H7 and associated factors in under-five children in Eastern Ethiopia. PloS one 16: e0246024.
GU X et al. 2025. Epidemiological and molecular characteristics of extraintestinal pathogenic Escherichia coli isolated from diseased cattle and sheep in Xinjiang, China from 2015 to 2019. BMC Vet Res 21: 42.
GULTOM et al. 2015. Kinerja USAha Ternak Sapi Perah di Kelurahan Kebon Pedes, Kota Bogor. Forum Agribisnis 5: 1.
HAILU W et al. 2021. Prevalence and Antimicrobial Resistance Profiles of Foodborne Pathogens Isolated from Dairy Cattle and Poultry Manure Amended Farms in Northeastern Ohio, the United States. Antibiotics 10: 1450.
HE QIYI et al. 2025. Development of a nanobody-based immunoassay for the detection of Escherichia coli O157:H7 in food samples. Food chemistry 473: 142987.
ISO 2006. International Standardization Organization. ISO 19458 : 2006 Water quality–443 Sampling for microbiological. Geneva (CH): ISO.
JENIFER A & SATHIYAMURTHY K. 2020. Molecular Screening of β-glucuronidase and Class 1 Integron of Escherichia coli from Ready-to-Eat Foods in Tiruchirappalli, Tamil Nadu. Journal of Pure and Applied Microbiology 14: 2181-2187.
JONES et al. 2023. Sporadic Shiga toxin–producing Escherichia coli–associated pediatric hemolytic uremic syndrome, France, 2012–2021. Emerging Infectious Diseases 29: 1978-1987.
KATADA et al. 2021. Aerobic Composting and Anaerobic Digestion Decrease the Copy Numbers of Antibiotic-Resistant Genes and the Levels of Lactose-Degrading Enterobacteriaceae in Dairy Farms in Hokkaido, Japan. Frontiers in microbiology 12: 737420.
KHANDAGHI J et al. 2010. Isolation of Escherichia coli O157:H7 from manure fertilized farms and raw vegetables grown on it, in Tabriz city in Iran. African Journal of Microbiology Research 4: 891-895.
KING et al. 2025. Epidemiology of Shiga toxin-producing Escherichia coli other than serotype O157:H7 in England, 2016–2023. Journal of Medical Microbiology 74: 001947.
KOETSIER G & CANTOR EJ. 2019. A Practical Guide to Analyzing Nucleic Acid Concentration and Purity with Microvolume Spectrophotometers 25: 121.
KOKKORIS et al. 2021. Challenges Using Droplet Digital PCR for Environmental Samples. Applied Microbiology 1: 74-88.
KOMPAS. 2004. 11 siswa SD keracunan susu kotak. Jakarta (Indones): Kompas Gramedia.
LI N et al. 2021. Fate of antibiotic resistance genes in abandoned swine feedlots in China: seasonal variation. Environ Sci Eur 33: 121.
MALAUL R & WINANDIR. 2017. Income of Dairy Cattle Farmers Who Are Members of KPS Bogor (Case Study: KUNAK Cibungbulang and Kebon Pedes Subdistrict). Forum Agribisnis 7: 67-84.
MATLOCK B. 2015. Assessment of Nucleic Acid Purity. Technical Note 52646: 1-2.
MENGISTU S et al. 2017. E. coli O157:H7 and Salmonella Species: Public Health Importance and Microbial Safety in Beef at Selected Slaughter Houses and Retail Shops in Eastern Ethiopia. Journal of Veterinary Science and Technology 8: 1-8.
MESELE F & ABUNNA F. 2019. Escherichia coli O157:H7 in Foods of Animal Origin and its Food Safety Implications: Review. Adv Biol Res 13: 134-145.
MESELE F et al. 2023. Occurrence of Escherichia coli O157:H7 in lactating cows and dairy farm environment and the antimicrobial susceptibility pattern at Adami Tulu Jido Kombolcha District, Ethiopia. BMC veterinary research 19: 6.
NEMATI et al. 2025. Shiga Toxin-Producing Escherichia coli (STEC) in Developing Countries: A 10-Year Review with Global Perspective. Microorganisms 13: 1529.
OLUWARINDE B et al. 2023. Safety Properties of Escherichia coli O157:H7 Specific Bacteriophages: Recent Advances for Food Safety 12: 3989.
PAZRA D et al. 2023. Distribution analysis of tetracycline resistance genes in Escherichia coli isolated from floor surface and effluent of pig slaughterhouses in Banten Province, Indonesia. Veterinary World 16: 509–517.
PETERSEN F & HUBBART JA. 2020. Physical Factors Impacting the Survival and Occurrence of Escherichia coli in Secondary Habitats. Water 12: 1796.
PODPEČAN B et al. 2007. The source of contamination of ground meat for production of meat products with bacteria Staphylococcus aureus. Slovenian Veterinary Research 44: 25-30.
RACHMAWATI F. 2018. Contamination of Escherichia coli O157:H7 in dairy cow farms. Jurnal Ilmu Ternak dan Veteriner 22: 205.
RILEY L et al. 1983. Hemorrhagic colitis associated with a rare Escherichia coli serotype. The New England journal of medicine 308: 681–685.
SARBA E et al. 2023. Occurrence and antimicrobial susceptibility patterns of Escherichia coli and Escherichia coli O157 isolated from cow milk and milk products, Ethiopia. Scientific reports 13: 16018.
SARGEANT J et al. 2004. Factors associated with the presence of Escherichia coli O157 in feedlot–cattle water and feed in the Midwestern USA. Preventive Veterinary Medicine 66: 207–221.
Scallan W et al. 2025. Foodborne Illness Acquired in the United States—Major Pathogens, 2019. Emerging Infectious Diseases. 31(4): 669-677.
SINETHEMBA & UCHECHUKWU. 2025. Microbiological methodologies: Comparative evaluation of microbial community and enhanced antibiotic susceptibility testing. Electronic Journal of Biotechnology 74: 29-40.
SINGHA S et al. 2023. Foodborne illnesses of Escherichia coli O157origin and its control measures. Journal of food science and technology 60: 1274–1283.
SOBUR M et al. 2019. Antibiotic-resistant Escherichia coli and Salmonella spp. associated with dairy cattle and farm environment having public health significance. Veterinary world 12: 984–993.
STANFORD K et al. 2005. Ecology of Escherichia coli O157:H7 in commercial dairies in southern Alberta. Journal of dairy science 88: 4441–4451.
SYAHRUL F et al. 2020. Transmission Media of Foodborne Diseases as an Index Prediction of Diarrheagenic Escherichia coli: Study at Elementary School, Surabaya, Indonesia. International journal of environmental research and public health 17: 8227.
VELOO et al. 2025. Prevalence and Antimicrobial Resistance Patterns of Escherichia coli in the Environment, Cow Dung, and Milk of Selangor Dairy Farms. Antibiotics 14: 137.
WANG et al. 2023. Aging of colloidal contaminants and pathogens in the soil environment: Implications for nanoplastic and COVID‐19 risk mitigation. Soil Use and Management. 39: 1135-1153.
WIDAYAT et al. 2019. Real Time-Polymerase Chain Reaction (RT-PCR) sebagai Alat Deteksi DNA Babi dalam Beberapa Produk Non-Pangan. Indonesia Journal of Halal 2: 2656-4963.
WIDGREN et al. 2013. Environmental sampling for evaluating verotoxigenic Escherichia coli O157: H7 status in dairy cattle herds. Journal of veterinary diagnostic investigation 25: 189–198.
WIRIYAPROM et al. 2022. Prevalence and Virulent Gene Profiles of Sorbitol Non-Fermenting Shiga Toxin-Producing Escherichia coli Isolated from Goats in Southern Thailand. Tropical Medicine and Infectious Disease 7: 357.
ZILHADIA et al. 2020. Analisis Cemaran Daging Babi pada Bakso Sapi yang Dijual di Tanjung Priok menggunakan Real-Time Polymerase Chain Reaction (RT-PCR). J Sains Farm Klin 7: 83-91.
Downloads
Published
How to Cite
Issue
Section
License
Copyright (c) 2025 Authors & Revista de Ciências Agroveterinárias

This work is licensed under a Creative Commons Attribution-NonCommercial 4.0 International License.
Authors publishing in this journal are in agreement with the following terms:
a) Authors maintain the copyrights and concede to the journal the copyright for the first publication, according to Creative Commons Attribution Licence.
b) Authors have the authority to assume additional contracts with the content of the manuscript.
c) Authors may supply and distribute the manuscript published by this journal.


